PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01155.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 378aa    MW: 41433.2 Da    PI: 6.2866
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01155.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.8e-29172230259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s  gC+++k+vers+ dp++++ tY +eHnh 
  Pahal.A01155.1 172 SDVWAWRKYGQKPIKGSPYPRGYYRCSSIkGCTARKQVERSHLDPNTFILTYISEHNHA 230
                     79************************9987****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-29159232IPR003657WRKY domain
PROSITE profilePS5081130.756166232IPR003657WRKY domain
SuperFamilySSF1182904.45E-25170232IPR003657WRKY domain
SMARTSM007749.5E-34171231IPR003657WRKY domain
PfamPF031064.7E-24173229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEEERHFNNC DLGVVKCMGS LHRLSPPRQA DIPFAALLPP QTQTQKEKTM MPAPAPEPAK  60
KPDADAGWRF PDVCTGSRQD GDELLKDLLA AHPPLPLPSP RSPPPLPPQQ QQQLVVTAMD  120
VPPPQVRTAL PSTLTRVLPS VWPVLGGLPN PKRRRNQMKK VVRHVPADGS SSDVWAWRKY  180
GQKPIKGSPY PRGYYRCSSI KGCTARKQVE RSHLDPNTFI LTYISEHNHA MPTHSNSLAR  240
TTLHMFPSSA APLPPPSVVV GGADTSNMQH HQPIPSLTTM STAGLSPMMP LCMPSMEQDD  300
DEDKDELMVE DMEIASEDEL LFLNTDGDYI APLEQMSSLS DMVDESFLSS PWVSASTIAD  360
QPAKGQPVSG ADLLKRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20156233380Disease resistance protein RRS1
5w3x_D2e-20156233380Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798400.10.0probable WRKY transcription factor 27
TrEMBLA0A2S3GN960.0A0A2S3GN96_9POAL; Uncharacterized protein
STRINGPavir.Ab01066.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.19e-41WRKY DNA-binding protein 27