PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01208.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 443aa MW: 48452.4 Da PI: 4.2467

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01208.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	66.8	6.3e-21	4	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkd 89 lppG++F+P d+elv +yL ++++g++ ++ ++ ++ Pw+L ++ ++ ++e yfF++++ + g r++r g+Wk++ + Pahal.A01208.1 4 LPPGVQFRPDDDELVEFYLLPRARGEPAPF---PDDDAAGSTLPWELLnRHGRGADDEAYFFVRSSGDGEgqekPGARQERgCSGGGTWKSQKRL 95 79***********************888...456678899*7345555777999876544322257799998899*99885 PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + s+ ++ + + ++ L ++ gr ++g + Wvmhey+l Pahal.A01208.1 96 AHGGSRvddaGEMVHWNRHNLNLHMGRGESGGSVGWVMHEYAL 138 4433333443788899***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-26	2	153	IPR003441	NAC domain
PROSITE profile	PS51005	27.194	4	154	IPR003441	NAC domain
Pfam	PF02365	3.3E-15	5	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence Send to blast
MLGLPPGVQF RPDDDELVEF YLLPRARGEP APFPDDDAAG STLPWELLNR HGRGADDEAY 60 FFVRSSGDGE GQEKPGARQE RGCSGGGTWK SQKRLAHGGS RVDDAGEMVH WNRHNLNLHM 120 GRGESGGSVG WVMHEYALTD PSCPPLKICH VAFTGHGKNR KRLPGGGDVD SQSEEPAPKR 180 ARVPSAGTGG SASSGSGSTT TTVDQDYCGV GHSSSEHQEP KQLSLEWISC QLLNDDLQSS 240 SLPSSVDQDY CFQEFAQAAA PTTEQQVPDH VMMTPLPMIQ QTAGIAKLQE FMAPMDQQEF 300 MMPLPMVHET AGMTELQEFI APMDQQEVMV PLLMVRETAG MAELQEFMAP MDQQEFMAPL 360 PMVQETAVMA ELQEFMASLP MVQETAGMAE LENPYQPMMT QHEFMAPIMG VTLGQYCGLS 420 RIGDMEAGAQ QDFVEWEGIL FY*

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence Send to blast

MLGLPPGVQF RPDDDELVEF YLLPRARGEP APFPDDDAAG STLPWELLNR HGRGADDEAY  60
FFVRSSGDGE GQEKPGARQE RGCSGGGTWK SQKRLAHGGS RVDDAGEMVH WNRHNLNLHM  120
GRGESGGSVG WVMHEYALTD PSCPPLKICH VAFTGHGKNR KRLPGGGDVD SQSEEPAPKR  180
ARVPSAGTGG SASSGSGSTT TTVDQDYCGV GHSSSEHQEP KQLSLEWISC QLLNDDLQSS  240
SLPSSVDQDY CFQEFAQAAA PTTEQQVPDH VMMTPLPMIQ QTAGIAKLQE FMAPMDQQEF  300
MMPLPMVHET AGMTELQEFI APMDQQEVMV PLLMVRETAG MAELQEFMAP MDQQEFMAPL  360
PMVQETAVMA ELQEFMASLP MVQETAGMAE LENPYQPMMT QHEFMAPIMG VTLGQYCGLS  420
RIGDMEAGAQ QDFVEWEGIL FY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954806.1	2e-91	NAC domain-containing protein 48
TrEMBL	A0A2T8KV81	1e-134	A0A2T8KV81_9POAL; Uncharacterized protein
STRING	Pavir.J28923.1.p	1e-159	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8717	9	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44290.1	9e-15	NAC domain containing protein 60

Link Out ? help Back to Top
Phytozome	Pahal.A01208.1