PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01234.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 349aa    MW: 37399.5 Da    PI: 4.9246
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01234.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.26.8e-2627133186
        trihelix   1 rWtkqevlaLiearremeerlrrgk........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                     rWt+qe+l+Lie++r +e r +rg                         + +p+W++v++++r++g+er+p+qC+++w+nl+++ykkike+e+  
  Pahal.A01234.1  27 RWTRQEILVLIEGKRMVEGRGGRGGrgrlaaaaaaaaasasggeaaaaaALEPKWAAVAEYCRRHGVERGPVQCRKRWSNLAGDYKKIKEWERAA 121
                     8********************998667788888999999999999999888******************************************86 PP

        trihelix  72 tsessstcpyfdqle 86 
                        + s+ p f  ++
  Pahal.A01234.1 122 ---AASREPSFWAMR 133
                     ...333557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-52739IPR009057Homeodomain-like
PfamPF138376.2E-1028132No hitNo description
Gene3DG3DSA:1.10.10.606.4E-574107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSNAGDPAGA AAAAAATPSG RAPRLPRWTR QEILVLIEGK RMVEGRGGRG GRGRLAAAAA  60
AAAASASGGE AAAAAALEPK WAAVAEYCRR HGVERGPVQC RKRWSNLAGD YKKIKEWERA  120
AAASREPSFW AMRNDARRER RLPGFFDREV YDILEGRGRA ILGSRSAGNA AEEEEAVAAV  180
RVEEEKEAGP AEAVFDSGRP ATEEALFSED EEEEEEEAPA AAPPPLPPQP VIAVPVSEKP  240
EASRQQQSAE QGTSKDKQPV QSTERDAPAQ QGGQKRPRTD EEAGEGTTDL QSKLIEILDR  300
NSRMVAAQLE AQNQNCELDR EQRKDQANSL VLVLGRLADA LGRIADKL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798066.10.0trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2S3GPV40.0A0A2S3GPV4_9POAL; Uncharacterized protein
STRINGSi017674m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.14e-46Trihelix family protein