PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01297.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 234aa    MW: 24079.5 Da    PI: 5.2911
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01297.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002282104123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C + F ++  L  H++ H
  Pahal.A01297.1  82 FTCNYCQRKFFSSQALGGHQNAH 104
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-679109No hitNo description
PROSITE profilePS5015711.32382109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNSKEMCQEP CDELSEISSQ AASNTEASNS SGRVSLDLSL TVAAAAAAES STTDNSNGNS  60
GGGGAQVDAA ATVAAREPSR VFTCNYCQRK FFSSQALGGH QNAHRRERTL ARRALRLDAA  120
APYGYYADVA SLPLYGSGLY PIGIQAHASP AARPEQQQQR HDAAAAARAD ELKPARGLLG  180
PMPFFVGDDE VSFGWPGSFR PTAAGAPAGG AALNSAGGSA MFAGEEPDLT LRL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882121e-133BT088212.1 Zea mays full-length cDNA clone ZM_BFc0067J23 mRNA, complete cds.
GenBankEU9769441e-133EU976944.1 Zea mays clone 994515 zinc finger protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797778.11e-169zinc finger protein 4-like
RefseqXP_025797779.11e-169zinc finger protein 4-like
TrEMBLA0A2S3ISH81e-167A0A2S3ISH8_9POAL; Uncharacterized protein
STRINGPavir.Ia03946.1.p1e-125(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98473041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-15zinc finger protein 4