PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01305.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 766aa    MW: 84825.9 Da    PI: 6.4081
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01305.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-095193347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
   Pahal.A01305.1 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-104497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.1674798IPR017884SANT domain
SMARTSM007175.1E-74896IPR001005SANT/Myb domain
PfamPF002499.5E-75193IPR001005SANT/Myb domain
CDDcd001678.99E-75194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MEEEVRGELN PLLQTIEFAP STSDPNQKLD SAQPSDPNQK PAKKPTRQWA AWTRQEEENF  60
FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFSLDAK NSKDTIAAML  120
RWWSLLEKFS CSASKLHLKP RRFKTFVEAL GNQLLKDRNK SRRKCPRVDM CISSPSPIVS  180
KGPGNESFPV KFLPVDSQNG SRVASPKGAF LKRMPETNCS KSGATKGDLS ATRTVKQKRR  240
AGGVVASAAY KKWERAAMAG VSLVADAAEE LERNTINPSM LCNVDARTLT SSSDKLSTVD  300
GISTNQMKEA DLQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSSRK KISSVLEHLN  360
RKWGNSNIAS GELILFPYCA HQEDLASYQR WTTRDTVAVA DVFLSVNSPS IFRLRYGWFS  420
LVELEAGVSE ISLTHFENCM IPEDIQVKSP SGDKACVQKD GTLLSNNIHE QYPCSSKDQS  480
ALLHITPSCT GKNTEVPEQP TSAPPSQFGS QKQVQDPVTQ AFEDDQGMNC AAISEGEWAD  540
TLTDISVGYL LTEASKGAHL DCIGTSSVKN ALFLENQCSY DSFDAAVALH VSRFQASQQP  600
AHTPHSTIWG AEETCDGFSF NLSASRKQEG SNTPSSSSPD TDNEVRTLNS EGFRGFLQDL  660
TGGEAAGDNT YNDDAKDREE FCAKSPPRSE DTNELKDQSL ADIYWPDSLG PLDLDIPSVR  720
YQADDLLIGD SQNSWNRMMA NSLDAFRNLS FFSSVDKNDS IPSIM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284240.0KJ728424.1 Zea mays clone pUT6729 MYB-related transcription factor (MYBR54) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796637.10.0TSL-kinase interacting protein 1 isoform X1
RefseqXP_025796638.10.0TSL-kinase interacting protein 1 isoform X1
TrEMBLA0A2S3ISL10.0A0A2S3ISL1_9POAL; Uncharacterized protein
STRINGPavir.J22108.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-177TSL-kinase interacting protein 1