PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01305.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 736aa    MW: 81585.3 Da    PI: 6.396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01305.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.8e-095193347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
   Pahal.A01305.2 51 AWTRQEEENFFNALRQVGKN-FEKITHRVQ-SKNKDQVRHYYYRL 93
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-104497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-54696IPR009057Homeodomain-like
PROSITE profilePS5129313.1674798IPR017884SANT domain
SMARTSM007175.1E-74896IPR001005SANT/Myb domain
CDDcd001679.03E-75194No hitNo description
PfamPF002499.0E-75193IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MEEEVRGELN PLLQTIEFAP STSDPNQKLD SAQPSDPNQK PAKKPTRQWA AWTRQEEENF  60
FNALRQVGKN FEKITHRVQS KNKDQVRHYY YRLVRRMKKL LGPGFSLDAK NSKDTIAAML  120
RWWSLLEKFS CSASKLHLKP RRFKTFVEAL GNQLLKDRNK SRRKCPRVDM CISSPSPIVS  180
KGPGNESFPV KFLPVDSQNG SRVASPKGAF LKRMPETNCS KSGATKGDLS ATRTVKQKRR  240
AGGVVASAAY KKWERAAMAG VSLVADAAEE LERNTINPSM LCNVDARTLT SSSDKLSTVD  300
GISTNQMKEA DLQAPAKLKL QLFPINEATR KALEKDEHNP HLELTLSSRK KISSVLEHLN  360
RKWGNSNIAS GELILFPYCA HQEDLASYQR WTTRDTVAVA DVFLSVNSPS IFRLRYGWFS  420
LVELEAGVSE ISLTHFENCM IPEDIQVKSP SGDKACVQKD GKNTEVPEQP TSAPPSQFGS  480
QKQVQDPVTQ AFEDDQGMNC AAISEGEWAD TLTDISVGYL LTEASKGAHL DCIGTSSVKN  540
ALFLENQCSY DSFDAAVALH VSRFQASQQP AHTPHSTIWG AEETCDGFSF NLSASRKQEG  600
SNTPSSSSPD TDNEVRTLNS EGFRGFLQDL TGGEAAGDNT YNDDAKDREE FCAKSPPRSE  660
DTNELKDQSL ADIYWPDSLG PLDLDIPSVR YQADDLLIGD SQNSWNRMMA NSLDAFRNLS  720
FFSSVDKNDS IPSIM*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622360.0BT062236.1 Zea mays full-length cDNA clone ZM_BFb0231C15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796639.10.0TSL-kinase interacting protein 1 isoform X2
TrEMBLA0A2S3ISI10.0A0A2S3ISI1_9POAL; Uncharacterized protein
STRINGPavir.J22108.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-178TSL-kinase interacting protein 1