PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01694.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 401aa    MW: 45273.2 Da    PI: 7.018
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01694.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.91.8e-20130214181
        trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpy 81 
                     +Wt ++v++L+ a+++++e++ +   g++++++W+ vs++m +rgf +sp+qC++k+ +lnk+yk+++e+ + +t ++ +++ ++
  Pahal.A01694.1 130 KWTGDMVKLLVSAVSYVDEDIDAdqgGARRMGKWRLVSSAMTKRGFAVSPQQCEDKFHDLNKKYKRVTEILGLGTaCKFVENPAL 214
                     7*********************8333469******************************************99953776666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-19128244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRLQIKYCCL VCILFLAATA VKTSVLDQAL TAASFLQIAR GLAEACVFSS EMEGDLPQHA  60
LIPGGAPCDL AQQSHLSTQP QMVQARQGTL AAPAADQMQE LGNVEEAPLG LKEDASGKAM  120
ATASQWHRVK WTGDMVKLLV SAVSYVDEDI DADQGGARRM GKWRLVSSAM TKRGFAVSPQ  180
QCEDKFHDLN KKYKRVTEIL GLGTACKFVE NPALLEEAGL SWKLKEKAKK LLSSKHLHFE  240
QMCSYHNRNR ACLLDDRVLL RMLRRMARMS PSKNYPFEYD KDNQVLICDD NQVLICDDDD  300
EDHVTKKLPQ AAAQGSGGPA DEKDPSHMDA AQIHRERLEI KRDMLKIKKR RLKRMRSIKE  360
QEWELQKMRM DNEMMDLEND QLELELELKE MEMGIQPKRI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344350LKIKKRR
2347352KKRRLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279503e-31KJ727950.1 Zea mays clone pUT6048 trihelix transcription factor (THX42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800639.10.0uncharacterized protein LOC112880301
TrEMBLA0A2T7F6K50.0A0A2T7F6K5_9POAL; Uncharacterized protein
STRINGPavir.J11642.1.p1e-173(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5643122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.12e-36