PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01861.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 462aa    MW: 51728.7 Da    PI: 8.9019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01861.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07393435145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+W++ + + ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
   Pahal.A01861.1 393 RGKWSKSDTDVFYQGLRQFGSD-FAMIQQLLP-DKTRQQVRAKFK 435
                      89********************.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-10384441IPR009057Homeodomain-like
PfamPF159631.3E-23386453No hitNo description
Gene3DG3DSA:1.10.10.603.0E-5390439IPR009057Homeodomain-like
PROSITE profilePS512939.022391442IPR017884SANT domain
SMARTSM007178.1E-8392440IPR001005SANT/Myb domain
CDDcd001671.62E-5395436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MTARCQPPNG RGSARSSPPP LTHVGHLQQR AGHLLPSAAH LSRQTTPLLP PQTPAMLDLA  60
CCQGYPGQVA AAHRQAQAAA PPFSQPLGHA SMPCPWIIAE ATCKSQPNVG REKGKGKSVS  120
FGLSDASGVV TPTDTNSEMG NFSNSCNDKL TDENLRNLSQ QTVEKEHNDN ESWYHEGEPL  180
DHAVEQLPKS GIGENRSSMK LRSRKKSQKV GTPKHTDDYF DEDCVEPSLV EEDNDSGDDY  240
TAGTNRKVRK KSRDDVEEPQ QQNVQKDKSQ VSSRGRKRTL KDASAEKPEK KLTHRIRQRR  300
AKEVKTLLEK PHEINPMKLS AAHLRLLQEA RECVNAKENP SGPSSNTSFQ FHDMDDLDYG  360
DEEARNFDND RTQNHVQDTK KLNYHSYMNK QTRGKWSKSD TDVFYQGLRQ FGSDFAMIQQ  420
LLPDKTRQQV RAKFKTEEKK NPLLVHDAII HRSGIICISK R*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794592e-42HF679459.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB53 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820632.10.0transcription factor TFIIIB component B''-like isoform X2
RefseqXP_025820634.10.0transcription factor TFIIIB component B''-like isoform X4
RefseqXP_025820635.10.0transcription factor TFIIIB component B''-like isoform X5
TrEMBLA0A2S3GPC20.0A0A2S3GPC2_9POAL; Uncharacterized protein
STRINGPavir.Aa02686.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.16e-31MYB_related family protein