PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01861.11
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 457aa    MW: 51873.8 Da    PI: 5.2337
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01861.11genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07306348145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+W++ + + ++++ +q+G++ ++ I + ++  +t+ q++ ++ 
  Pahal.A01861.11 306 RGKWSKSDTDVFYQGLRQFGSD-FAMIQQLLP-DKTRQQVRAKFK 348
                      89********************.*********.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-10297354IPR009057Homeodomain-like
PfamPF159631.0E-23299367No hitNo description
Gene3DG3DSA:1.10.10.602.9E-5303352IPR009057Homeodomain-like
PROSITE profilePS512939.022304355IPR017884SANT domain
SMARTSM007178.1E-8305353IPR001005SANT/Myb domain
CDDcd001677.41E-5308349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MLDLACCQGY PAEATCKSQP NVGREKGKGK SVSFGLSDAS GVVTPTDTNS EMGNFSNSCN  60
DKLTDENLRN LSQQTVEKEH NDNESWYHEG EPLDHAVEQL PKSGIGENRS SMKLRSRKKS  120
QKVGTPKHTD DYFDEDCVEP SLVEEDNDSG DDYTAGTNRK VRKKSRDDVE EPQQQNVQKD  180
KSQVSSRGRK RTLKDASAEK PEKKLTHRIR QRRAKEVKTL LEKPHEINPM KLSAAHLRLL  240
QEARECVNAK ENPSGPSSNT SFQFHDMDDL DYGDEEARNF DNDRTQNHVQ DTKKLNYHSY  300
MNKQTRGKWS KSDTDVFYQG LRQFGSDFAM IQQLLPDKTR QQVRAKFKTE EKKNPLLVHD  360
AIIHRSGVIL LNSDNLYFKK VIKNLNIEDV AQQEINNTHK QDGASSEPGK EDALDDCIHE  420
EDDSNWLDEE PGVQKPEEHA SGNDDDGDLG DVFDWY*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794592e-32HF679459.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB53 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820634.10.0transcription factor TFIIIB component B''-like isoform X4
RefseqXP_025820635.10.0transcription factor TFIIIB component B''-like isoform X5
TrEMBLA0A2T8KVG30.0A0A2T8KVG3_9POAL; Uncharacterized protein
STRINGPavir.Aa02686.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.14e-32MYB_related family protein