PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01861.6

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 411aa MW: 46632.6 Da PI: 7.1817

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01861.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.7	1.1e-07	342	384	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+W++ + + ++++ +q+G++ ++ I + ++ +t+ q++ ++ Pahal.A01861.6 342 RGKWSKSDTDVFYQGLRQFGSD-FAMIQQLLP-DKTRQQVRAKFK 384 89******************.*****.******9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.39E-10	333	390	IPR009057	Homeodomain-like
Pfam	PF15963	1.1E-23	335	402	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-5	339	388	IPR009057	Homeodomain-like
PROSITE profile	PS51293	9.022	340	391	IPR017884	SANT domain
SMART	SM00717	8.1E-8	341	389	IPR001005	SANT/Myb domain
CDD	cd00167	3.93E-5	344	385	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MFGAQAKEER VAKFQPKNVD ATDDLDYHNE LVDTPMDGAE SMVGKVSAEA TCKSQPNVGR 60 EKGKGKSVSF GLSDASGVVT PTDTNSEMGN FSNSCNDKLT DENLRNLSQQ TVEKEHNDNE 120 SWYHEGEPLD HAVEQLPKSG IGENRSSMKL RSRKKSQKVG TPKHTDDYFD EDCVEPSLVE 180 EDNDSGDDYT AGTNRKVRKK SRDDVEEPQQ QNVQKDKSQV SSRGRKRTLK DASAEKPEKK 240 LTHRIRQRRA KEVKTLLEKP HEINPMKLSA AHLRLLQEAR ECVNAKENPS GPSSNTSFQF 300 HDMDDLDYGD EEARNFDNDR TQNHVQDTKK LNYHSYMNKQ TRGKWSKSDT DVFYQGLRQF 360 GSDFAMIQQL LPDKTRQQVR AKFKTEEKKN PLLVHDAIIH RSGIICISKR *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MFGAQAKEER VAKFQPKNVD ATDDLDYHNE LVDTPMDGAE SMVGKVSAEA TCKSQPNVGR  60
EKGKGKSVSF GLSDASGVVT PTDTNSEMGN FSNSCNDKLT DENLRNLSQQ TVEKEHNDNE  120
SWYHEGEPLD HAVEQLPKSG IGENRSSMKL RSRKKSQKVG TPKHTDDYFD EDCVEPSLVE  180
EDNDSGDDYT AGTNRKVRKK SRDDVEEPQQ QNVQKDKSQV SSRGRKRTLK DASAEKPEKK  240
LTHRIRQRRA KEVKTLLEKP HEINPMKLSA AHLRLLQEAR ECVNAKENPS GPSSNTSFQF  300
HDMDDLDYGD EEARNFDNDR TQNHVQDTKK LNYHSYMNKQ TRGKWSKSDT DVFYQGLRQF  360
GSDFAMIQQL LPDKTRQQVR AKFKTEEKKN PLLVHDAIIH RSGIICISKR *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679459	1e-42	HF679459.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB53 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820635.1	0.0	transcription factor TFIIIB component B''-like isoform X5
TrEMBL	A0A2T7F5N8	0.0	A0A2T7F5N8_9POAL; Uncharacterized protein
STRING	Pavir.Aa02686.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-31	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Pahal.A01861.6