PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01871.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 159aa MW: 18255.9 Da PI: 10.5983

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01871.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.2	5.7e-35	26	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lp+G+rF+Ptd el++++Lk+k+ g + + +++ i+evd+ kvePwdLp + + +++ewy F r+++ r rat gyW t k++ v++ Pahal.A01871.1 26 LPRGYRFRPTDAELINHHLKPKLLGYHRPGKSIvIPEVDLRKVEPWDLPDTSRLDTSEWYVFNLRRHRGGFRIRVDRATPGGYWILTRKKR-VMD 119 799********************997776666***********77777889**************************9966.555 PP NAM 95 k..kgelvglkktLvfykgrapkgekt.dWvmheyrl 128 ++ ++g+kkt+ y+g+apkg+k +Wvmhey + Pahal.A01871.1 120 DgnNRMVIGTKKTFFHYRGKAPKGTKNeEWVMHEYGV 156 4356667*************97537****75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.02E-39	24	156	IPR003441	NAC domain
PROSITE profile	PS51005	39.348	26	158	IPR003441	NAC domain
Pfam	PF02365	3.0E-19	27	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MSGSPPLPLS PSQEAGRPGN PLPTDLPRGY RFRPTDAELI NHHLKPKLLG YHRPGKSIVI 60 PEVDLRKVEP WDLPDTSRLD TSEWYVFNLR RHRGGFRIRV DRATPGGYWI LTRKKRVMDD 120 GNNRMVIGTK KTFFHYRGKA PKGTKNEEWV MHEYGVEV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-22	25	154	16	140	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-22	25	154	16	140	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-22	25	154	16	140	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-22	25	154	16	140	NO APICAL MERISTEM PROTEIN
3swm_A	2e-22	26	154	20	143	NAC domain-containing protein 19
3swm_B	2e-22	26	154	20	143	NAC domain-containing protein 19
3swm_C	2e-22	26	154	20	143	NAC domain-containing protein 19
3swm_D	2e-22	26	154	20	143	NAC domain-containing protein 19
3swp_A	2e-22	26	154	20	143	NAC domain-containing protein 19
3swp_B	2e-22	26	154	20	143	NAC domain-containing protein 19
3swp_C	2e-22	26	154	20	143	NAC domain-containing protein 19
3swp_D	2e-22	26	154	20	143	NAC domain-containing protein 19
3ulx_A	2e-22	25	154	14	138	Stress-induced transcription factor NAC1
4dul_A	2e-22	25	154	16	140	NAC domain-containing protein 19
4dul_B	2e-22	25	154	16	140	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815549.1	1e-113	NAC domain-containing protein 59-like
TrEMBL	A0A2T8IM62	1e-112	A0A2T8IM62_9POAL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G29035.1	8e-35	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	Pahal.A01871.1