PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01874.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 128aa    MW: 13782.5 Da    PI: 9.5146
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01874.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.88.1e-202256135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++
  Pahal.A01874.1 22 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 56
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.9E-151674IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.4281652IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.28E-131958No hitNo description
Gene3DG3DSA:3.30.50.102.8E-162057IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.31E-132157No hitNo description
PfamPF003201.5E-172256IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MGSADHSEID GIVVAERGAR SCVECRATTT PMWRSGPTGP RSLCNACGIR YRKKRRQELG  60
LDHKQQQQQR SQHNGEATTE VKDSSSSSSG SSNLQAVQKR RLLMGVEEAA LLLMTLSSSP  120
TSTLLHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0403891e-109BT040389.1 Zea mays full-length cDNA clone ZM_BFc0088I05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814363.17e-89GATA transcription factor 23-like
SwissprotQ8LC599e-18GAT23_ARATH; GATA transcription factor 23
TrEMBLA0A2S3HVM72e-87A0A2S3HVM7_9POAL; Uncharacterized protein
STRINGPavir.Ea01306.1.p5e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.11e-18GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]