PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01898.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 164aa    MW: 16428.2 Da    PI: 7.4197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01898.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67e-0696118930
                     HHHHHHHHHHHHHHHHCTSCC.C CS
             HLH   9 ErrRRdriNsafeeLrellPk.a 30 
                      +rRR++iN+++   ++l+P+ +
  Pahal.A01898.1  96 AQRRRSKINEKMKAMQSLIPElL 118
                     69******************944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-597117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDEQGFGSFM GDAGRCGTRG AGGNSALAAS APPPAAAAAG GRGGGGDTMP DVRRGHDVPG  60
GGAGAGPRPA GGLREDAGGL GDSDASGLEP EPEAAAQRRR SKINEKMKAM QSLIPELLPT  120
YLAAVACWKI GNWGILGREK GSVNIADSVR SARWTGSYDH TQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945GGRGGGG