PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01919.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 376aa    MW: 39103.2 Da    PI: 7.4176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01919.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.3e-19201250255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  Pahal.A01919.1 201 HYRGVRRRP-WGKWAAEIRDPA----KaARVWLGTFDTAEAAAAAYDDAALRFKG 250
                     7********.**********83....36************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-31200259IPR001471AP2/ERF domain
PROSITE profilePS5103225.132201258IPR001471AP2/ERF domain
SMARTSM003809.0E-34201264IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21201259IPR016177DNA-binding domain
PfamPF008472.1E-12201250IPR001471AP2/ERF domain
PRINTSPR003673.5E-11202213IPR001471AP2/ERF domain
CDDcd000182.35E-12209259No hitNo description
PRINTSPR003673.5E-11224240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MIQAASQVVL DVEETRPCAV NGDEGARSGV LPDGEETIQA ASQRSKVEHR RHGVKRPLPE  60
PDDEEAQPAA SLSPASVPTI SLERHFPRRR QQQIVLGRGG GAGVGHDGCW SAPAPAPYHV  120
QTHQQQGAYY STIAYDDVGA GSSTTSSHQA GHLAAAAVPP APAGSHQQAT PEAGTAAAAA  180
AAAGGQAVEV QEEEGNVTRR HYRGVRRRPW GKWAAEIRDP AKAARVWLGT FDTAEAAAAA  240
YDDAALRFKG AKAKLNFPER VRGRTGQGAF LVSPGVPQQP PPSSLPTAAA PFPGLMRYAQ  300
LLQGWNSGNN AASSAGGLAL PALAMPPAQA SSSVQILDFS TQQLVRGSPT TSASMSRTSR  360
VDEAHEAHQS CNAPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-24200261466ATERF1
3gcc_A7e-24200261466ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057499e-87AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17.
GenBankAP0058429e-87AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22.
GenBankAP0149589e-87AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126109e-87CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8313309e-87CT831330.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA126O21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821338.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3L6QBV20.0A0A3L6QBV2_PANMI; Ethylene-responsive transcription factor ABI4-like
STRINGGRMZM2G016434_P019e-90(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.19e-20related to AP2 6l