PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02021.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family M-type_MADS
Protein Properties Length: 252aa    MW: 27041.1 Da    PI: 9.2611
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02021.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.7e-161148340
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                    i n+s r  tf kRr+g++KKA+EL +LC+++v v ++
  Pahal.A02021.1 11 IANDSTRRATFKKRRKGLMKKASELATLCGVDVFVAVY 48
                    89********************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.23E-21186IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.815148IPR002100Transcription factor, MADS-box
SMARTSM004325.4E-20160IPR002100Transcription factor, MADS-box
CDDcd002668.23E-29286No hitNo description
PRINTSPR004049.2E-9323IPR002100Transcription factor, MADS-box
PfamPF003197.1E-171148IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MARKKVALQW IANDSTRRAT FKKRRKGLMK KASELATLCG VDVFVAVYVE GEAQPEVWPD  60
APGEAERIAA RFKAVPDLDQ CKKKLDMEGL LRQQNDKSRD QLHKAQLENR ERERQLLLHD  120
AIAGRRPGLV GLSVEQVVTL GLMVEQRIQA VMDAIARLQG EGHDLPAATA PPQPPLAPCS  180
TGAGAGRRDI MMPQAPHPQG WMMAVGDTRA PAYSGFIGAG GTSAGGDMPL QFSGMGFGFA  240
GPDAGQSFPS M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVALQWIANDSTRRATFKKRR
22125KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821492.10.0agamous-like MADS-box protein AGL80
TrEMBLA0A2S3GPS40.0A0A2S3GPS4_9POAL; Uncharacterized protein
STRINGPavir.Aa01999.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-25AGAMOUS-like 80