PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02066.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 243aa    MW: 25765.1 Da    PI: 10.8047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02066.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20126174355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t+e+Aa+a++ a+++l+g
  Pahal.A02066.1 126 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFATPEDAARAYDGAALRLHG 174
                     9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.9E-32125183IPR001471AP2/ERF domain
PfamPF008471.4E-13125174IPR001471AP2/ERF domain
PROSITE profilePS5103224.935125182IPR001471AP2/ERF domain
SMARTSM003807.5E-37125188IPR001471AP2/ERF domain
PRINTSPR003673.7E-11126137IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22126183IPR016177DNA-binding domain
CDDcd000184.71E-24133184No hitNo description
PRINTSPR003673.7E-11148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRPPPSSPAP ASLLEAAEEA IIVAALTHVL ANGRGATLTP HAPSPVVPPC PWTATGCHRG  60
HVGQAACRGE PSPSAHIVSA RDRSACEQGL MAASATHELA PMASAWPQEA QRGAAAAAAS  120
SRRRSYRGVR RRPWGKWAAE IRDPKKAARV WLGTFATPED AARAYDGAAL RLHGSRAKLN  180
FPEDASSLRH PPAPVGSRQP GSGWDRTLDR SACPEMVKRR DNGRFLGYWS IGTWSPSPKP  240
TC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-23124187468ATERF1
3gcc_A9e-23124187468ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0914071e-47FP091407.1 Phyllostachys edulis cDNA clone: bphyem102c19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821598.11e-125ethylene-responsive transcription factor ERF110-like
TrEMBLA0A3L6QL761e-119A0A3L6QL76_PANMI; Uncharacterized protein
STRINGPavir.Aa01729.1.p3e-96(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-23ERF family protein