PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02068.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 295aa    MW: 30461.2 Da    PI: 10.5127
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02068.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-20132180355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t+e+Aa+a++ a+++l+g
  Pahal.A02068.1 132 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFVTPEDAARAYDGAALCLRG 180
                     9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.632131188IPR001471AP2/ERF domain
PfamPF008472.7E-13131180IPR001471AP2/ERF domain
SMARTSM003801.7E-37131194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32131189IPR001471AP2/ERF domain
PRINTSPR003678.5E-11132143IPR001471AP2/ERF domain
CDDcd000188.43E-30132190No hitNo description
SuperFamilySSF541719.15E-22132189IPR016177DNA-binding domain
PRINTSPR003678.5E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MRPPPSSTVP TPPLREATEA AAIVAALAQV IAGGRGAMLT TPRPATSPAP SPVVPPCPPT  60
AVGSHRGDVS PPAWQGEASA SASAHIVSDS AVPQVRSAPA QCLLPSPAQA PMASTWPQGA  120
EQGLAPPAPR SYRGVRRRPW GKWAAEIRDP KKAARVWLGT FVTPEDAARA YDGAALCLRG  180
SRAKLNFPED ASSLRHLPAP VGSRQPSSCW NRTIDRSPCP EMVHRRDTTD GFSGGDNGRF  240
LGSWNIGTSS PSPKATCSTA PVNATLLCGS HGTGSSGTKD AGNGTDKRNN ARHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-22130193468ATERF1
3gcc_A4e-22130193468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821609.11e-131ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2S3GQ770.0A0A2S3GQ77_9POAL; Uncharacterized protein
STRINGPavir.Aa01785.1.p1e-113(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-29ERF family protein