PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02117.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 228aa MW: 25370.2 Da PI: 6.5006

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02117.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.4	5.3e-31	7	147	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......................kvkaeekewyfFskrdkkyatgk 72 lppGf+F P+de+lvv++L++k+++ +++ ++i++v + +++Pw+L+ ++ + ++wyfFs++++ Pahal.A02117.1 7 LPPGFHFFPSDEDLVVHFLRRKAANLPCRP-DIIPTVLLQHYNPWELNGlhphpflyfhgkyhvlikdnpqgTALQAGNQWYFFSHAAQ------ 94 79***********************999.99**********8457999**9999998888763334678**9855...... PP NAM 73 rknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +r+ +gyW+ g d++v+s +g vglkktL+f +g+ +kg kt+W+mhey+l Pahal.A02117.1 95 --SRISPNGYWNPIGADETVTS-SGCIVGLKKTLIFCTGEPSKGFKTNWIMHEYHL 147 ..68999***********.999***************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-38	4	190	IPR003441	NAC domain
PROSITE profile	PS51005	38.213	7	191	IPR003441	NAC domain
Pfam	PF02365	1.9E-20	8	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MGGATDLPPG FHFFPSDEDL VVHFLRRKAA NLPCRPDIIP TVLLQHYNPW ELNGLHPHPF 60 LYFHGKYHVL IKDNPQGTAL QAGNQWYFFS HAAQSRISPN GYWNPIGADE TVTSSGCIVG 120 LKKTLIFCTG EPSKGFKTNW IMHEYHLQDG GYNVSGSSTS SSSSSSRKSQ RKRVHSSTES 180 NNWVICRVFE SSCGSQVSFH DEGTELSCLD EVFLSLDDYD EVSLPNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-29	7	196	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-29	7	196	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-29	7	196	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-29	7	196	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-29	7	196	20	173	NAC domain-containing protein 19
3swm_B	4e-29	7	196	20	173	NAC domain-containing protein 19
3swm_C	4e-29	7	196	20	173	NAC domain-containing protein 19
3swm_D	4e-29	7	196	20	173	NAC domain-containing protein 19
3swp_A	4e-29	7	196	20	173	NAC domain-containing protein 19
3swp_B	4e-29	7	196	20	173	NAC domain-containing protein 19
3swp_C	4e-29	7	196	20	173	NAC domain-containing protein 19
3swp_D	4e-29	7	196	20	173	NAC domain-containing protein 19
4dul_A	4e-29	7	196	17	170	NAC domain-containing protein 19
4dul_B	4e-29	7	196	17	170	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT831377	3e-48	CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827936.1	1e-135	NAC domain-containing protein 104-like
TrEMBL	A0A2S3GPW1	1e-134	A0A2S3GPW1_9POAL; Uncharacterized protein
TrEMBL	A0A2T7F7M2	1e-134	A0A2T7F7M2_9POAL; Uncharacterized protein
STRING	Pavir.Aa01694.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-55	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Pahal.A02117.1