PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02183.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 479aa    MW: 51218.9 Da    PI: 6.5526
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02183.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.11.5e-103784471374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     lv+lL++cA a+++gd ++a+  L++ +   a+ +  + + R+a++f+ ALa+rl+           p+++++  +  el++   f+++ P+lkf
  Pahal.A02183.1  78 LVHLLVTCAGAIQAGDYSAADDNLTQARSFlAAITSsTGIGRVAKHFVDALAQRLVPAH--------PQAAPPPATPAELHI--HFYDAGPYLKF 162
                     68*************************998755555499*****************932........222222223345555..5********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ taNqaIl+++eg++rvH++D+ ++qGlQWpaL++aL++R +gpp lRiTg+g       +e+ e+g rL++fA++l+vpf f+ + +++l+ 
  Pahal.A02183.1 163 AYSTANQAILDSFEGCDRVHVVDLALMQGLQWPALIHALSQRHGGPPYLRITGIGG----AGDEIGEVGVRLEQFARSLDVPFTFREVRVDQLDG 253
                     ********************************************************....99********************************* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrll...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres. 279
                     l+ ++L v pgEala n+vlqlhrll   d + +++ ++d++L+lv sl+P v++vveqeadhn++ ++erf++al +ysa+fds+ a  +r+  
  Pahal.A02183.1 254 LRHWMLGVVPGEALAFNSVLQLHRLLvdpDVDPAVPAPIDTLLHLVTSLQPMVFTVVEQEADHNRPALVERFTNALFHYSAMFDSMVAASHRTGg 348
                     *************************9333444556669************************************************555567766 PP

            GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk...vksdgyrveeesgslvlgWkdrpLvsv 370
                      ++ + + +++l+ ei +vv+ eg++r erhe +++Wrerl +aG+ ++p++ +++  a + l +   ++  gy v e  gsl l W+drpL+++
  Pahal.A02183.1 349 gSTTSALAEACLRAEILDVVCGEGSARAERHEPVGRWRERLARAGLAQLPFGADEVRRATAQLIRatlFSATGYGVLECAGSLALAWHDRPLYAA 443
                     89999999**********************************************9999887664411155899********************** PP

            GRAS 371 SaWr 374
                     +aWr
  Pahal.A02183.1 444 TAWR 447
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.78752424IPR005202Transcription factor GRAS
PfamPF035145.3E-10178447IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MVGHIPFGWL PMDPAAASAA TGNLPAPFSA AAANGHVYYY LDPALYASAV PLARQPAVPT  60
AAEVARRRQE EEDAGIHLVH LLVTCAGAIQ AGDYSAADDN LTQARSFLAA ITSSTGIGRV  120
AKHFVDALAQ RLVPAHPQAA PPPATPAELH IHFYDAGPYL KFAYSTANQA ILDSFEGCDR  180
VHVVDLALMQ GLQWPALIHA LSQRHGGPPY LRITGIGGAG DEIGEVGVRL EQFARSLDVP  240
FTFREVRVDQ LDGLRHWMLG VVPGEALAFN SVLQLHRLLV DPDVDPAVPA PIDTLLHLVT  300
SLQPMVFTVV EQEADHNRPA LVERFTNALF HYSAMFDSMV AASHRTGGGS TTSALAEACL  360
RAEILDVVCG EGSARAERHE PVGRWRERLA RAGLAQLPFG ADEVRRATAQ LIRATLFSAT  420
GYGVLECAGS LALAWHDRPL YAATAWRATG GDERDKGRRR NSRNGSGESN GRGNRATA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-48594462378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821834.10.0DELLA protein SLR1-like
TrEMBLA0A2S3GQ570.0A0A2S3GQ57_9POAL; Uncharacterized protein
STRINGPavir.Aa01633.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-83RGA-like 1