PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02186.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 392aa    MW: 41811.1 Da    PI: 7.1707
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02186.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.6e-1561142286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W++  + +Li+a  e+  +l+rg+l+ p+W+ev++++ ++ g+    rs +qCk++++ l+k+yk +k+ + +       ++pyfd+l+
  Pahal.A02186.1  61 WSDGATSTLIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYskgARSDIQCKNRIDTLKKKYKVEKAKRAS-------SWPYFDRLD 142
                     *************************************87778843357999***************9999886.......5******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2359144No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDDDGAASPS PSPSPSRSPS PLPVADPVTV AAAPPGHVAV AIPLRKPSPS SGGGGGREDA  60
WSDGATSTLI DAWGERFVAL GRGSLRHPQW QEVAEVVSSR DGYSKGARSD IQCKNRIDTL  120
KKKYKVEKAK RASSWPYFDR LDDLLAPVYK ANSSSSSAAA AARSAPPMVP PRINFPQRTR  180
TPLQPSAGAK RRMPSPPPQA SASSDSSDGF PPEPLSALAN GKRQRVEEPT PAAATNGAES  240
SSSSRVQGLR DLAQAIRRLG EVYERVESAK REQELRMEQE RLEAARELEE QRVEFFLKMQ  300
MELSKATGSG SAAPVAVPIP ADGNGTRRTG MAAEVASSSN HRVRYRIKGS MHHQAAQQPH  360
YQNNAASGGN GSDSDNKEAE EDAEDEEEES Q*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650910.0EU965091.1 Zea mays clone 283747 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815450.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2S3GQF30.0A0A2S3GQF3_9POAL; Uncharacterized protein
STRINGPavir.J27535.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-26sequence-specific DNA binding transcription factors