PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02194.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 326aa    MW: 35498.5 Da    PI: 5.8679
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02194.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-18156210256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++++eq   Le+ F+++++++ +++ +LAk+l+L  rqV vWFqNrRa+ k
  Pahal.A02194.1 156 RKKLRLSQEQSAFLEDSFKEHSTLTPKHKSDLAKRLNLRPRQVEVWFQNRRARTK 210
                     788899***********************************************98 PP
2HD-ZIP_I/II122.52.1e-39156245191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     +kk+rls+eq+++LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev+eLr +l
  Pahal.A02194.1 156 RKKLRLSQEQSAFLEDSFKEHSTLTPKHKSDLAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRRCETLAQENRRLHREVAELR-AL 245
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-18137210IPR009057Homeodomain-like
PROSITE profilePS5007116.941152212IPR001356Homeobox domain
SuperFamilySSF466891.8E-17153221IPR009057Homeodomain-like
SMARTSM003899.6E-16154216IPR001356Homeobox domain
CDDcd000866.90E-16156213No hitNo description
PfamPF000461.7E-15156210IPR001356Homeobox domain
PROSITE patternPS000270187210IPR017970Homeobox, conserved site
CDDcd146860.00445205246No hitNo description
PfamPF021831.5E-10212245IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.6E-21212255IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MELELSLGDS PAPAKGTSTP VLTPTCAGKE DHDELVLELG VGSAKRTEQD SQKTPTQREE  60
DAQDQEEDGE ACFHSESPVE LSLGCPLLPA SAETGSANSE ECRRGFEVNT VLVDGDTVQG  120
RSLSTSSLHM EVPVRQAADQ EAAEDEENSG VGGGARKKLR LSQEQSAFLE DSFKEHSTLT  180
PKHKSDLAKR LNLRPRQVEV WFQNRRARTK LKQTEVDCEY LKRRCETLAQ ENRRLHREVA  240
ELRALRTAPY PFNGHLPAAG LSTARVCPSC DDDKVTARNP AITASSPAVA PPSPVSTLFA  300
RPHFRAFTVH PVLRRQPSAA TWGAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204212RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799983.10.0homeobox-leucine zipper protein HOX7-like
SwissprotA2X6741e-109HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A2S3GQ320.0A0A2S3GQ32_9POAL; Uncharacterized protein
STRINGPavir.Ab02093.1.p1e-175(Panicum virgatum)
STRINGSi019736m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-54homeobox from Arabidopsis thaliana