PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02219.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 152aa    MW: 17889.4 Da    PI: 12.1132
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02219.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.73.5e-10140948
                     HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     d +l ++ +++G ++W+++a++m  gR+  +c+ rw+++l
   Pahal.A02219.1  1 DARLERLAREHGFRHWRRVAARMVPGRSSRECRGRWRNHL 40
                     67999*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.015142IPR001005SANT/Myb domain
CDDcd001673.17E-8140No hitNo description
PROSITE profilePS5129418.296144IPR017930Myb domain
PfamPF002491.2E-8140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-12149IPR009057Homeodomain-like
SuperFamilySSF466898.39E-172191IPR009057Homeodomain-like
PROSITE profilePS500906.8884191IPR017877Myb-like domain
SMARTSM007170.00394593IPR001005SANT/Myb domain
CDDcd001670.003794890No hitNo description
Gene3DG3DSA:1.10.10.603.0E-95090IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
DARLERLARE HGFRHWRRVA ARMVPGRSSR ECRGRWRNHL ARDVYHRPFT ARDDDDLARL  60
YVRHGGRWRE MSRAVHGRTS RVMRRRWREV RDSDAFLSRL WRPRAPVSAP AHQDAAVMEP  120
SLQQQPVFTC VGQCLLLTEP LLASFRNLLS Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A6e-1319219108MYB21
3osf_D6e-1319219108MYB21
3osg_A6e-1319219108MYB21
3osg_D6e-1319219108MYB21
3zqc_A7e-131871095MYB3
3zqc_D7e-131871095MYB3
3zqc_G7e-131871095MYB3
3zqc_J7e-131871095MYB3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821894.11e-105transcription factor MYB73-like
TrEMBLA0A2T8KWK01e-103A0A2T8KWK0_9POAL; Uncharacterized protein
STRINGSi020066m7e-54(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125692035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-16myb domain protein r1