PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02242.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family EIL
Protein Properties Length: 570aa    MW: 61620.5 Da    PI: 6.364
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02242.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3334.23e-1021694292265
                     XXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX...............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaatgakksn...............ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekg 81 
                     +lk+rmwkdqmll++l++r     +++     a  s+                ++ + rrk+m raQDg+L++Mlk+me+cna+GfvYg i+e g
  Pahal.A02242.1 169 DLKRRMWKDQMLLNKLEGRAGAFRAAAG----AGPSRplappgaggllgeeePPEVRCRRKAMLRAQDGVLRHMLKMMEACNARGFVYGVIDEAG 259
                     9******************998654333....333334455666666666659999*************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S CS
            EIN3  82 kpvegasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtG 176
                     +p++g+sdsLr+WWk++v+fdr+gp+a++         +ges +     s  h+l+++qD+tlgS+Lsal+qhc+ppqr+fple+g++pPWWPtG
  Pahal.A02242.1 260 EPMSGSSDSLRGWWKDNVSFDRAGPMALTGP-------AGESPR--GIASCLHMLQDIQDSTLGSVLSALIQHCEPPQRSFPLERGLAPPWWPTG 345
                     *****************************98.......455555..358899******************************************* PP

                     --HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX CS
            EIN3 177 kelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss 265
                     +e  ++     ++qg ppy+kphdlkkawk+s+L+avikhmsp+++++r+l++qsk+lq+kmsake+ +++++l+qee + ++++++ +
  Pahal.A02242.1 346 HEGEVQ-----AHQGVPPYRKPHDLKKAWKISLLSAVIKHMSPRFDQMRKLVWQSKRLQQKMSAKETETWSKILRQEEVLSRRFKSSLQ 429
                     *96555.....99*****************************************************************99988777643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.8E-106169418No hitNo description
Gene3DG3DSA:1.10.3180.103.0E-58298427IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.85E-51302420IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MVARAGGAPR TRSLPEATAT SFGHPHGPVA AEPRHEPRHL PPALHARSPS DSLAQRLLAA  60
ALRSSDRVYK SFFPTPAQQS SWIICRSCQV RRPPTTHAGR ACLLARASMN HGIHGRRHPF  120
SEAAMEHDVP HGGGGAGEAL EAAAAPEPEL EQEELSDSES GAESIEVSDL KRRMWKDQML  180
LNKLEGRAGA FRAAAGAGPS RPLAPPGAGG LLGEEEPPEV RCRRKAMLRA QDGVLRHMLK  240
MMEACNARGF VYGVIDEAGE PMSGSSDSLR GWWKDNVSFD RAGPMALTGP AGESPRGIAS  300
CLHMLQDIQD STLGSVLSAL IQHCEPPQRS FPLERGLAPP WWPTGHEGEV QAHQGVPPYR  360
KPHDLKKAWK ISLLSAVIKH MSPRFDQMRK LVWQSKRLQQ KMSAKETETW SKILRQEEVL  420
SRRFKSSLQI TPLDDEEEGD GDGDDDGDGL EGVGGRAHDK RKRELISTRH NSGSTSRWGG  480
SGELAVVLPE LAGLLADESL SPIDELAKLF YSHAPADQGG GHLENGAAAM LPPGELDLCG  540
IDAVPPDVLF DLIGSCSGLE DVFRLMEED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-443004241130Protein ETHYLENE INSENSITIVE 3
4zds_B2e-443004241130Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269670.0KJ726967.1 Zea mays clone pUT3668 EIL transcription factor (EIL5) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797229.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX161e-83EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A2S3GQN60.0A0A2S3GQN6_9POAL; Uncharacterized protein
STRINGPavir.Ab01993.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.12e-83EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]