PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02671.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 219aa MW: 22345.2 Da PI: 10.5216

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02671.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.1	3.8e-35	55	178	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg............ 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss+++++++ Pahal.A02671.1 55 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSSHHHQQTvlgkrpreegda 149 89*******************************************************99999444332333333333333333566666666666 PP TCP 89 ............................k 89 + Pahal.A02671.1 150 aaaasafwaalpapprtteawgfspleaQ 178 66554444444444444444444333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-31	54	137	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	54	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MATTRDVSTA AAMFNVYQPL PALSTAAPAA AADGGGGAMA AVPAKPVKKE GGGGKDRHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG SGTTPAVFVS 120 SSAPSTSSSS SHHHQQTVLG KRPREEGDAA AAASAFWAAL PAPPRTTEAW GFSPLEAQAA 180 AAAAAAAAYV PMAQAHHHHL NLLAALSGAA RRAEEETR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727699	0.0	KJ727699.1 Zea mays clone pUT5638 TCP transcription factor (TCP16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792458.1	1e-154	transcription factor TCP21-like
Swissprot	Q9FMX2	1e-42	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2S3GRA0	1e-153	A0A2S3GRA0_9POAL; Uncharacterized protein
STRING	Sb04g026970.1	9e-94	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	5e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.A02671.1