PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02700.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 459aa    MW: 48674.3 Da    PI: 9.5938
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19215265256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Pahal.A02700.1 215 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 265
                     59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.01E-31214274No hitNo description
SuperFamilySSF541717.85E-23215273IPR016177DNA-binding domain
SMARTSM003801.1E-38215278IPR001471AP2/ERF domain
PROSITE profilePS5103223.024215272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-32215273IPR001471AP2/ERF domain
PfamPF008472.7E-12216265IPR001471AP2/ERF domain
PRINTSPR003678.2E-11216227IPR001471AP2/ERF domain
PRINTSPR003678.2E-11238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MEPADRGGGG RGLGLGRGRG WKGKAVTSGG PAAGRQLAPV LEDTPAAALL RPLKKIRSPD  60
RRFHRSLSTL SSPAPASPDS SSVSNPVSPP ATPLPSTRHV FPFAYDTAPA ASAPSVPPLL  120
QYSSVYQQPQ QQPLQHQQMI SFGGSQQQQQ PPPPQFGAAA SPLFPPQLVA PEVQPQMLLR  180
YWSEALNLSP RGFRGGAVPP ALYQQLLRSA GPPKLYRGVR QRHWGKWVAE IRLPRNRTRL  240
WLGTFDTAED AAMAYDREAF KLRGENAKLN FPDLFLGKGR VGGSGRTSAS AAASCSSSSS  300
SAPPTPDETN AKQAQQHHGE QPPSNSEGKP LLPETEQAKN SEPEPNPQLQ PTDHQGGDGN  360
AAVFQPSATS GGVWVPADEA WFSAWGPGSS VWDYDMDNAH GLFLQSRFAS EATSMDYAAS  420
APDVPATPAA GTAMASAASI SFPPPPPPPR SPAYMWKD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19214272463ATERF1
3gcc_A1e-19214272463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276740.0KJ727674.1 Zea mays clone pUT5601 AP2-EREBP transcription factor (EREB76) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809849.10.0ethylene-responsive transcription factor ERF054-like
TrEMBLA0A2S3GRD60.0A0A2S3GRD6_9POAL; Uncharacterized protein
STRINGSi019997m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.19e-36ERF family protein