PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02723.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 232aa    MW: 23883.1 Da    PI: 4.2336
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02723.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-16244448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++eE+e    +++ lG++ W++Iar ++ gRt++++k++w++yl
   Pahal.A02723.2  2 FSPEEEETVMSLHATLGNK-WSRIARQLP-GRTDNEVKNYWNSYL 44
                     89*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.328148IPR017930Myb domain
SuperFamilySSF466892.57E-13248IPR009057Homeodomain-like
PfamPF002498.5E-15244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-21245IPR009057Homeodomain-like
CDDcd001675.69E-12244No hitNo description
SMARTSM007174.1E-10246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MFSPEEEETV MSLHATLGNK WSRIARQLPG RTDNEVKNYW NSYLKKRVEG KEGPSTPAPA  60
GTSSGADSED SQSAKPGDGA AATDRPADSG GSSEPRESSS ADSSCLTGPP AVACRPHAAP  120
VAPKVMFADW LDMVDMDCLG GGPAAAAPGL DAAAGVVGAS ASTGDRDQHH QVMSQGSVQV  180
DGPSGVDVSL HGFGDSGASC WEFQEHFDGI DQMSTTGFCD LLAMSEFFGL N*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828702.11e-167transcription factor LAF1-like
TrEMBLA0A2S3GRI61e-168A0A2S3GRI6_9POAL; Uncharacterized protein
STRINGSi017947m1e-128(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10280.16e-20myb domain protein 92