PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02732.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 257aa    MW: 27059.9 Da    PI: 8.0253
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02732.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY218.42.2e-67202145170
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa..eshldeslkee.....................lleelk 76 
                     s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      aa   ++l+  + ++                     l+++  
  Pahal.A02732.1  20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPPAAppANQLSFGGGHSllsptsphglldefafqapslLMDQAS 114
                     578********************************************99965554004455444444488889999*888888877775444444 PP

           YABBY  77 veeenlksnvekeesastsvssekl.....senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                      + +++ +  ++++s  ++ ++  +     + +++ e+p+  p v+rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+
  Pahal.A02732.1 115 ANLSSTITGRSNSSSCASNLPAAPMpaakpPVQQEPEMPKSAPsVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPH 209
                     333333333444444444444445578887899999***98877*************************************************** PP

           YABBY 166 ihfgl 170
                     ihfgl
  Pahal.A02732.1 210 IHFGL 214
                     ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.0E-7021214IPR006780YABBY protein
SuperFamilySSF470956.94E-8152207IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-4163206IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMSSSSSSSA AFPLDHLAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL  60
LSVNLRGLLL PPAAPPANQL SFGGGHSLLS PTSPHGLLDE FAFQAPSLLM DQASANLSST  120
ITGRSNSSSC ASNLPAAPMP AAKPPVQQEP EMPKSAPSVN RPPEKRQRVP SAYNRFIKDE  180
IQRIKAGNPD ITHREAFSAA AKNWAHFPHI HFGLMPDQGL KKTFKTQDGA EDMLLKDGLY  240
AAAAAAAAAN MGITPF*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9607730.0EU960773.1 Zea mays clone 228481 yabby15 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828644.10.0protein YABBY 4-like
SwissprotA2X7Q31e-127YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-127YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A2S3GRG90.0A0A2S3GRG9_9POAL; Uncharacterized protein
TrEMBLA0A2T7F9N60.0A0A2T7F9N6_9POAL; Uncharacterized protein
STRINGSb04g033590.11e-149(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-64YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]