PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02885.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 305aa MW: 32804.5 Da PI: 10.7426

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02885.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.1e-32	24	77	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt+eLH++Fv+av+ LGG++kAtPk il+lm+v gLt++hvkSHLQ+YR+ Pahal.A02885.1 24 PRLRWTSELHRSFVRAVDCLGGPDKATPKLILQLMDVRGLTIAHVKSHLQMYRS 77 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-30	20	78	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.14	20	80	IPR017930	Myb domain
SuperFamily	SSF46689	5.91E-16	24	77	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	24	77	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-6	25	76	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MGGADGGGRN GGAATRRYNR STVPRLRWTS ELHRSFVRAV DCLGGPDKAT PKLILQLMDV 60 RGLTIAHVKS HLQMYRSSGH DMRKREMQPR LGHLKHSFTI DGGGPKEFFC PPMKRAKAGA 120 EAPATAMHER MQGNSDMGAA GARRCSDDYT QAVPVGSRRI TECPGLPWQR EASAASALQE 180 LGFWVRGTEP FKVRQIGRPI ANRLSPVVRP LSSKEIKCED RCFLFGTATR DEPAKRRSPS 240 QPPASIDPKA AVAAVSSLPS EGSCVLSPPP PSTSFNGCSR PGRGSCLFAG QRINLNLSLS 300 ICGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-17	25	78	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-17	25	78	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-17	25	78	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-17	25	78	3	56	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799208.1	0.0	uncharacterized protein LOC112879085
TrEMBL	A0A3L6QKA4	0.0	A0A3L6QKA4_PANMI; Uncharacterized protein
STRING	Pavir.Ab02674.1.p	1e-180	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-27	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.A02885.1