PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A02905.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

ERF

Protein Properties

Length: 234aa MW: 24670.3 Da PI: 5.3345

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A02905.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.5	1.7e-18	62	112	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ykGVr++ grWv+e+r+p g ++r++lg+f tae+Aa+a++ a+++l+g Pahal.A02905.1 62 PVYKGVRRRN-PGRWVCEVREP--HG-KQRIWLGTFETAEMAARAHDVAALALRG 112 68***887.9**9996..33.5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	9.0E-14	62	112	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.089	63	120	IPR001471	AP2/ERF domain
SMART	SM00380	6.0E-28	63	126	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.62E-21	63	121	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.1E-30	63	122	IPR001471	AP2/ERF domain
CDD	cd00018	9.70E-21	64	122	No hit	No description
PRINTS	PR00367	2.8E-8	64	75	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-8	86	102	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MDAGAFVSSD YYSSSGTPSP VGGGGGGADG DDDGSSSSYM TVSSAPPKRR AGRTKFKETR 60 HPVYKGVRRR NPGRWVCEVR EPHGKQRIWL GTFETAEMAA RAHDVAALAL RGRAACLNFA 120 DSPRLLRVPP MGAGHDEIRR AAAVAAEQFR PTPGQGNAAA VEVAAAPPVA LPSAPQNFDD 180 PYCIVDDRLD FGMQGYLDMA QGMLIDPPPM AGSSASGGDD DDNDNGEVRL WSY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-14	61	119	12	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727873	0.0	KJ727873.1 Zea mays clone pUT5966 AP2-EREBP transcription factor (EREB16) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806310.1	1e-169	dehydration-responsive element-binding protein 1G-like
Swissprot	A2XWL6	1e-100	DRE1E_ORYSI; Dehydration-responsive element-binding protein 1E
Swissprot	Q8H273	1e-100	DRE1E_ORYSJ; Dehydration-responsive element-binding protein 1E
TrEMBL	A0A2S3GRZ6	1e-168	A0A2S3GRZ6_9POAL; Uncharacterized protein
STRING	Si018262m	1e-126	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP196	36	261

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25470.1	4e-35	C-repeat/DRE binding factor 2

Link Out ? help Back to Top
Phytozome	Pahal.A02905.1

Publications ? help Back to Top
Chen JQ,Meng XP,Zhang Y,Xia M,Wang XP Over-expression of OsDREB genes lead to enhanced drought tolerance in rice. Biotechnol. Lett., 2008. 30(12): p. 2191-8 [PMID:18779926] Li S, et al. Mutation of OsGIGANTEA Leads to Enhanced Tolerance to Polyethylene Glycol-Generated Osmotic Stress in Rice. Front Plant Sci, 2016. 7: p. 465 [PMID:27148296]