PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A02912.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 230aa    MW: 23810 Da    PI: 10.0481
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A02912.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.91.1e-25133177145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e+
  Pahal.A02912.1 133 EPEPGRCRRTDGKKWRCSRDVVPGHKYCERHVHRGRGRSRKPVEA 177
                     69****************************************985 PP
2QLQ53.38.6e-1967103137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     sa+T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  Pahal.A02912.1  67 SALTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103
                     799*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.5E-667103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.22568103IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.4E-1168102IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.701133177IPR014977WRC domain
PfamPF088793.3E-21134176IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MADDKETDSA QPPAKLPRLS GADTSAGEVT MAASSPLVLG LGLGLGAGGG ERDAEASAAT  60
AAPKRASALT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVVASSF GPQRFPSLMG  120
LGSLCFDYRS SMEPEPGRCR RTDGKKWRCS RDVVPGHKYC ERHVHRGRGR SRKPVEAASA  180
AAPTTAAAAV SSSRSGAPVH HHGGAGVAPH GLGFSPTSVL LAHSAARAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278570.0KJ727857.1 Zea mays clone pUT5948 GRF transcription factor (GRF9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816416.11e-164growth-regulating factor 10-like isoform X2
SwissprotQ6EPP91e-98GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLA0A2S3GSC01e-163A0A2S3GSC0_9POAL; Uncharacterized protein
STRINGSi018252m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.12e-36growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]