PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03010.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 272aa    MW: 27998.6 Da    PI: 3.6974
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03010.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.6e-102291948
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                     lG++ W++Ia++++ gRt++++k+ w+++l
   Pahal.A03010.2  2 LGNK-WSKIAACLP-GRTDNEIKNVWNTHL 29
                     8999.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.2E-7129IPR001005SANT/Myb domain
PROSITE profilePS5129416.959133IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-13230IPR009057Homeodomain-like
SuperFamilySSF466892.04E-8233IPR009057Homeodomain-like
CDDcd001673.30E-6429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLGNKWSKIA ACLPGRTDNE IKNVWNTHLK KKAALREQQK AGAAKNDGAA SGGDAGTPVT  60
DSSSASSSTT TTNSSSGGSD SGDQCDTSKE PDAVPVSPLQ LEDVDVSEML VDAPAAAQPM  120
LSASCSSSSL TTCAGGVEDL IELPVIDIEP DIWSIIDGEC ADASGARRGD ATAPCTGAAV  180
STSEAGEAAN DWWLENLEKE LGLWGPAEDP QAQTDLLDHT GFGPLVDSEG DPVSTYFQTG  240
PDNAAAELLL DVELELELEL EPEPEPSALL L*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814304.10.0myb-related protein Zm1-like
SwissprotP200241e-101MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A2S3GS790.0A0A2S3GS79_9POAL; Uncharacterized protein
STRINGPavir.Aa01159.1.p1e-115(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.14e-16myb domain protein 58
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]