PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03032.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 446aa    MW: 46123.3 Da    PI: 6.1861
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03032.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.9e-31193251259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+
  Pahal.A03032.1 193 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPSLLVITYNSEHNHP 251
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.684187253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.5E-31189253IPR003657WRKY domain
SuperFamilySSF1182903.79E-26190253IPR003657WRKY domain
SMARTSM007747.8E-38192252IPR003657WRKY domain
PfamPF031066.6E-26194251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MPAGVAELSS TGTPGWHQLP APEPGAGLFP PPQPSSSDGA GPSGDGFGDA FAGLSDAFGT  60
GSDFRACSSG GAAGFFDFEA PVGGRGGGGA LVDSGGGGVV AMGMQMPALS PREIRPYPVM  120
MADGDTVKLG LPTMMPGLAV GPPCAFDAVG AMQMPSPHGG GIKRRKNQAR KVVCIPAPAA  180
SAEGRTTGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCPARKQV ERSRTDPSLL  240
VITYNSEHNH PWPTQRNALA GSTRSHHAKN SKNNSSHNLQ KPTVKAELDH QTPPVTSAAA  300
TATAATSTTT TATTSTTSNN TPTTTMAVKE ETMAGSEMDK DSSDHHDTSV ALDHGDLMQQ  360
MFSQSYRPLI PEGGHHVDDF FADLAELESD PMSLIFPGCD PGSREKAAPP KGLGADPLFN  420
MLDWGANNVV ATSAGSSFEQ GESGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-23166254280Disease resistance protein RRS1
5w3x_D3e-23166254280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288GGRGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791328.10.0probable WRKY transcription factor 14
TrEMBLA0A2T8KXC50.0A0A2T8KXC5_9POAL; Uncharacterized protein
STRINGPavir.Ab02810.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-60WRKY DNA-binding protein 35