PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A03051.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 276aa MW: 30254.3 Da PI: 8.6307

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A03051.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.4e-34	26	80	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Pahal.A03051.1 26 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 80 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.032	23	83	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.6E-33	23	81	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-17	26	82	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-25	26	81	IPR006447	Myb domain, plants
Pfam	PF00249	8.4E-10	28	79	IPR001005	SANT/Myb domain
Pfam	PF14379	3.7E-24	125	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MFEGMERAGY GGAAAMGGVV LSRDPKPRLR WTPDLHERFV EAVTKLGGPD KATPKSVLRL 60 MGMKGLTLYH LKSHLQKYRL GKQSKKDTGL EASRGAFAAQ GINFSAPVPP SIPSTAGNNT 120 GETPLADALK YQIEVQRKLH EQLEVQKKLQ MRIEAQGKYL QTILEKAQNN LSYDATGAAN 180 LEATRSQLTD FNLALSGFMD NVSQACEQNN GELAKAMTED NLRASNLGFQ LYHGVHDGED 240 VKCTPDEGLL LLDLNIRGGY DHRSTADLKM NQHMR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-21	26	82	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808925.1	0.0	myb family transcription factor PHL11-like
TrEMBL	A0A2S3GSU5	0.0	A0A2S3GSU5_9POAL; Uncharacterized protein
STRING	Si018049m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	6e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.A03051.1