PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03051.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 231aa    MW: 25454.9 Da    PI: 7.7285
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03051.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.44.8e-165352555
         G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    ++AtPk++l+lm++kgLtl+h+kSHLQkYRl
  Pahal.A03051.2  5 HEATPKSVLRLMGMKGLTLYHLKSHLQKYRL 35
                    78****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015574.1E-10536IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.8E-14536IPR009057Homeodomain-like
SuperFamilySSF466891.79E-5637IPR009057Homeodomain-like
PfamPF143792.8E-2480124IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MIVMHEATPK SVLRLMGMKG LTLYHLKSHL QKYRLGKQSK KDTGLEASRG AFAAQGINFS  60
APVPPSIPST AGNNTGETPL ADALKYQIEV QRKLHEQLEV QKKLQMRIEA QGKYLQTILE  120
KAQNNLSYDA TGAANLEATR SQLTDFNLAL SGFMDNVSQA CEQNNGELAK AMTEDNLRAS  180
NLGFQLYHGV HDGEDVKCTP DEGLLLLDLN IRGGYDHRST ADLKMNQHMR *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00544DAPTransfer from AT5G45580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808925.11e-165myb family transcription factor PHL11-like
TrEMBLA0A2T7FAX81e-170A0A2T7FAX8_9POAL; Uncharacterized protein
STRINGPavir.Aa00783.1.p1e-159(Panicum virgatum)
STRINGSi018049m1e-160(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45580.12e-44G2-like family protein