PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03182.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 250aa    MW: 28216.2 Da    PI: 8.8758
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03182.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.4e-063450522
                    --SGGGGTS--TTTTT-S CS
         zf-CCCH  5 lCrffartGtCkyGdrCk 22
                     C f+++ G C++G+rC+
  Pahal.A03182.1 34 VCTFYQK-GACSFGSRCR 50
                    5******.*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.408128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0077127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6426IPR000571Zinc finger, CCCH-type
PfamPF156631.3E-7562No hitNo description
PROSITE profilePS5010313.4972956IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033055IPR000571Zinc finger, CCCH-type
SuperFamilySSF578504.5E-1581161No hitNo description
Gene3DG3DSA:3.30.40.101.9E-1090156IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.90E-496156No hitNo description
PfamPF136392.6E-896155IPR001841Zinc finger, RING-type
SMARTSM001849.2E-797154IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.29797155IPR001841Zinc finger, RING-type
PROSITE patternPS005180121130IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010314.202184213IPR000571Zinc finger, CCCH-type
SMARTSM003560.028184212IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSKRVPCKFF LHGACFKGDY CEFSHDCNDR PDNVCTFYQK GACSFGSRCR NEHVEVRRNR  60
PQPATTAARV SSNSSQLLCK KNNRLLEALR KSEDIECGVC LDRVLSKPTA KERRFGLLSD  120
CDHSFCISCI RNWRSTSPTS GMDVNSTLRA CPICRKLSYY VVPSTTWYSS KEGKQEIVEG  180
YKAKLRSIDC KHFDFGKGTC PFGSSCFYKH AYRDGRLEEA LLNHNDADGA SAAIARLMRL  240
SYLLTRLHV*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0545500.0BT054550.1 Zea mays full-length cDNA clone ZM_BFc0152O03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798940.11e-123E3 ubiquitin-protein ligase makorin-like isoform X1
RefseqXP_025798941.11e-123E3 ubiquitin-protein ligase makorin-like isoform X2
SwissprotQ5ZA071e-93C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2S3GSP71e-121A0A2S3GSP7_9POAL; Uncharacterized protein
STRINGPavir.Ab03056.1.p1e-118(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.25e-84C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]