PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A03226.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YB

Protein Properties

Length: 219aa MW: 23286.4 Da PI: 9.1293

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A03226.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	108.5	4.3e-34	54	140	7	93
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 lP+an++r+m++v+P+ k+s ak+++++c++ef++fv++eas+++++++r+ i+++d+ a+ tlG++dyvep+++y+++yre Pahal.A03226.1 54 GLPMANLVRLMRQVIPKGVKVSTRAKHLTHDCAVEFVGFVAGEASEQARAQHRRIISPEDFTRAFQTLGLDDYVEPMSTYIRRYREH 140 69***********************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-24	53	142	IPR009072	Histone-fold
Pfam	PF00808	5.1E-13	54	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	5.33E-21	55	142	IPR009072	Histone-fold
PRINTS	PR00615	3.6E-5	82	100	No hit	No description
PRINTS	PR00615	3.6E-5	120	138	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MALPTKFHKI ERMGRKAKRG GAKKGVRDAE KTKVAPADCA SPDGEGGSAS AAAGLPMANL 60 VRLMRQVIPK GVKVSTRAKH LTHDCAVEFV GFVAGEASEQ ARAQHRRIIS PEDFTRAFQT 120 LGLDDYVEPM STYIRRYREH HNIAAGYGGF VTRAPPVAAT AAAAPVTAPG VPCFSDEEMQ 180 HLSSMVLPPA HGEHDGEGSS SAYTPTPAGR CYSYTGYM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-22	55	139	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243257	0.0	AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822765.1	1e-160	nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A2T8KXK0	1e-159	A0A2T8KXK0_9POAL; Uncharacterized protein
STRING	Pavir.Ab03026.1.p	4e-86	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	3e-24	nuclear factor Y, subunit B2

Link Out ? help Back to Top
Phytozome	Pahal.A03226.1