PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03234.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 238aa    MW: 25181.9 Da    PI: 10.2994
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03234.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.5e-13168212250
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 
                     r +h++ E+rRR +iN+++e LrellP+     ++K +Ka+ L +A  Y
  Pahal.A03234.1 168 RSKHSATEQRRRTKINDRLEILRELLPHG----DQKRDKASFLLEAKVY 212
                     899*************************7....79********998665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-12164215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-14165222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.113166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10168211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-10168212No hitNo description
SMARTSM003532.9E-4172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MQLFQGEKPA HDFLSLHTGG GSSSPVQHSA QGYDLGVHTS LKPLKLGKRR GGGSGGGAVG  60
MAPSGLEADS SEHLLPGGVG TFSIRQAPST AQPRGQPAGQ VVVARGAFAP VLHGSRTEAA  120
HGAESGARAH CGPATTWQDS GTDQRSRATR GEGRSSGSSG DQGPSTPRSK HSATEQRRRT  180
KINDRLEILR ELLPHGDQKR DKASFLLEAK VYYRSCWKNT EDNKCEETIH VTKKLRC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349LKLGKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432571e-119AC243257.1 Panicum virgatum clone PV_ABa103-H05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798281.11e-153transcription factor BIM2-like isoform X1
TrEMBLA0A2S3GTA61e-152A0A2S3GTA6_9POAL; Uncharacterized protein
STRINGSi016505m3e-94(Setaria italica)
STRINGGRMZM2G317450_P034e-97(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.13e-19bHLH family protein