PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A03257.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 214aa MW: 24709.8 Da PI: 5.9297

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A03257.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.8	1.9e-27	92	141	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++e +s++Fs+pik+AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl Pahal.A03257.1 92 NGLTFELVSRHFSMPIKQAARELNVGLTVLKKRCRELGIPRWPHRKVKSL 141 679*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.098	72	161	IPR003035	RWP-RK domain
Pfam	PF02042	4.4E-23	94	141	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MEELRLYEEG DCFQRLKLHE DEGYFQFQDF SADYQLGEET HFGAISCPES SFSQDDLGCL 60 SEVDFASFWA LVEEEDARRK SEEGPRSGPG KNGLTFELVS RHFSMPIKQA ARELNVGLTV 120 LKKRCRELGI PRWPHRKVKS LQTLIDNVQE HGKLSAQEDG HLTRSLVESL QRTKKLIEER 180 PEVMLDEETK GLRQACFKEA FKRRRLLSHG TYW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	205	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822796.1	1e-156	protein RKD1
Swissprot	Q9M9U9	2e-36	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2S3GTB4	1e-155	A0A2S3GTB4_9POAL; Uncharacterized protein
STRING	Pavir.Aa00708.1.p	1e-126	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-38	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pahal.A03257.1