PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03360.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27627.3 Da    PI: 9.4756
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.32e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev  iifsstg+lye+ss
  Pahal.A03360.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGFIIFSSTGRLYEFSS 59
                    8***********************************************96 PP
2K-box77.73e-2677170598
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      g+++++++   +q+e+a L+++++nLq+++++l+Ge+L+ L  ++Lq+Le++Le sl+++R +K+++l+++ieel +k  ++++en++L +++
  Pahal.A03360.1  77 LGVNNATSELMLWQREAASLRQQLHNLQESHKQLMGEELSGLGARDLQSLENRLEMSLRNVRMRKDHILKSEIEELHRKGSMIHQENMELCRRV 170
                     456678888999*****************************************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.945161IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002655.86E-44277No hitNo description
SuperFamilySSF554553.53E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.3E-2685170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.85586179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGFIIFSS TGRLYEFSST  60
NMKAVIDRYG KAKEEQLGVN NATSELMLWQ REAASLRQQL HNLQESHKQL MGEELSGLGA  120
RDLQSLENRL EMSLRNVRMR KDHILKSEIE ELHRKGSMIH QENMELCRRV NIMSQQKMEL  180
HRKLQASEQR DAADANTSSS TPYSFSIAQD ADIPSNLEQI QSHQKEGENH KTGAPELGLQ  240
LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20174174MEF2C
5f28_B1e-20174174MEF2C
5f28_C1e-20174174MEF2C
5f28_D1e-20174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810861.11e-176MADS-box transcription factor 57-like
SwissprotQ6Z6W21e-139MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A2T8KXQ51e-177A0A2T8KXQ5_9POAL; Uncharacterized protein
STRINGPavir.Aa00445.1.p1e-168(Panicum virgatum)
STRINGPavir.Ab02921.1.p1e-168(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-90AGAMOUS-like 16
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]