PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03378.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 326aa    MW: 35536.1 Da    PI: 4.4698
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03378.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2070123356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  Pahal.A03378.1  70 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 123
                     5678*************************************************9 PP
2HD-ZIP_I/II1322.3e-4269161193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal+++++ L +++++Lr+++++
  Pahal.A03378.1  69 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDVLLQDNHRLRSQVAS 161
                     69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.33E-2063127IPR009057Homeodomain-like
PROSITE profilePS5007118.2265125IPR001356Homeobox domain
SMARTSM003892.0E-2068129IPR001356Homeobox domain
PfamPF000467.2E-1870123IPR001356Homeobox domain
CDDcd000868.85E-2170126No hitNo description
Gene3DG3DSA:1.10.10.608.0E-2271132IPR009057Homeodomain-like
PRINTSPR000312.1E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000312.1E-6105121IPR000047Helix-turn-helix motif
PfamPF021832.8E-17125167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MESGRLIFNA TGSGAGQMLF LDCGAGGGLF HRGGRPMLGL EEGRGVKRPF FTSPDELLEE  60
EYYDEQLPEK KRRLTPEQVH LLERSFEEEN KLEPERKTEL ARKLGLQPRQ VAVWFQNRRA  120
RWKTKQLERD FDRLKASFDA LRADHDVLLQ DNHRLRSQVA SLTEKLQEKE ATEGGADAEV  180
LPVDVKASLA DDIEEPATEA AAAFEAHQVK SEDRLSTGSG GSAVVDTDAL LCGRFAAAVD  240
SSVESYFPGG EGHYHDCGMG PVNHCAGGIQ SDDDGAGSDE GCSYYPEEAE AAAAAAVAAA  300
FFAGHAHPHA DDDEDASQIG WWMWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9619490.0EU961949.1 Zea mays clone 239214 homeodomain leucine zipper protein CPHB-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813024.10.0homeobox-leucine zipper protein HOX16-like isoform X1
SwissprotQ6YWR41e-138HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2S3GT380.0A0A2S3GT38_9POAL; Uncharacterized protein
STRINGPavir.Aa00462.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-68homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]