PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03463.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 257aa    MW: 26654.8 Da    PI: 6.5099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03463.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20117167155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GVr+++ +g+W+AeIrdp     +   r +lg+f+tae+Aa+a++ a+ +++g
  Pahal.A03463.1 117 SKYRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEDAARAYDVAAVEFRG 167
                     89********.**********7.....338***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.6E-12117167IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-23117176IPR016177DNA-binding domain
CDDcd000184.60E-29117174No hitNo description
SMARTSM003802.0E-35118181IPR001471AP2/ERF domain
PROSITE profilePS5103225.528118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31118176IPR001471AP2/ERF domain
PRINTSPR003673.9E-11119130IPR001471AP2/ERF domain
PRINTSPR003673.9E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAPRLERGGF QLPNAEQENS LLLRALISVV SGDNAVPALE PEEAPPAVAA AAPAPAPAPS  60
PAVACAGCGA DGCAAGCELL AAAGTGSSSD SEDGGECSAS RAVTGGVGKR RRRMRVSKYR  120
GVRRRPWGKW AAEIRDPHRA VRKWLGTFDT AEDAARAYDV AAVEFRGQRA KLNFPAAQAA  180
AVAPAPASSW APTSTYHHLT PQPLPESLHE NCGSNAASPA PAGQQGTRSA AKEQDIWDGL  240
NEIMMMDDGS FWSSMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-201181751472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108124KRRRRMRVSKYRGVRRR
2109125RRRRMRVSKYRGVRRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749753e-76EU974975.1 Zea mays clone 461977 ethylene-responsive element binding protein 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806850.10.0ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2S3GTV80.0A0A2S3GTV8_9POAL; Uncharacterized protein
STRINGSi018144m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.16e-15ethylene response factor 110