 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.A03550.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
NF-YA |
| Protein Properties |
Length: 248aa MW: 26828.9 Da PI: 11.9337 |
| Description |
NF-YA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.A03550.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | CBFB_NFYA | 39.8 | 1.5e-12 | 111 | 136 | 33 | 58 |
CBFB_NFYA 33 ksrkpylheSRhkhAlrRpRgsgGrF 58
++ pylheSRh hA++R+Rg gGrF
Pahal.A03550.2 111 AATVPYLHESRHLHAMKRARGLGGRF 136
6678*********************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 248 aa
Download sequence Send
to blast |
MQSRGPESRP EEGTRGEVAR RRSSFARRTH RGRRVGAMLL PSSSSSSASK GNSLRKTVID 60
NMRSNLSFDN KQPLFASQDI DYGQPIACIS YPYNDSGSGG VWAAYGSRAS AATVPYLHES 120
RHLHAMKRAR GLGGRFLNTK QLQQQPRNAS TRSTTNGTSS SGSTHLRLGG GTARDQTMLA 180
PKAMPSQDNS KNAVSSAPGF TVIPMLRRDD TFFQQPSHHL SFSGHFGQAS AQAGMHNGTQ 240
HRVPVMR*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KF184677 | 1e-130 | KF184677.1 Saccharum hybrid cultivar R570 clone BAC 101B12 complete sequence. |
| GenBank | KF184702 | 1e-130 | KF184702.1 Saccharum hybrid cultivar R570 clone BAC 201D09 complete sequence. |
| GenBank | KF184726 | 1e-130 | KF184726.1 Saccharum hybrid cultivar R570 clone BAC 117K09 complete sequence. |
| GenBank | KF184736 | 1e-130 | KF184736.1 Saccharum hybrid cultivar R570 clone BAC 053L01 complete sequence. |
| GenBank | KF184772 | 1e-130 | KF184772.1 Saccharum hybrid cultivar R570 clone BAC 022O20 complete sequence. |
| GenBank | KF184816 | 1e-130 | KF184816.1 Saccharum hybrid cultivar R570 clone BAC 239H20 complete sequence. |
