PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03697.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 678aa    MW: 73794.1 Da    PI: 6.3128
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03697.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28211264155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Pahal.A03697.1 211 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 264
                     79*******************.********************************8 PP
2Response_reg776.9e-26231311109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ +++l+++l++ +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  G
  Pahal.A03697.1  23 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAVIALRMLRENRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHG 115
                     799********************.***************99999********************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+  eel++
  Pahal.A03697.1 116 ACDYLLKPVRLEELRN 131
                     **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.8E-1831677IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.2E-4120144No hitNo description
SuperFamilySSF521721.02E-3420147IPR011006CheY-like superfamily
SMARTSM004481.6E-3021133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.32922137IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.42E-2624136No hitNo description
PROSITE profilePS5129412.56208267IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-30209269IPR009057Homeodomain-like
SuperFamilySSF466898.96E-20209268IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-25211264IPR006447Myb domain, plants
PfamPF002491.2E-6213263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MRPEERNGAV RRVRDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTTT NQAVIALRML  60
RENRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETKTVMK GITHGACDYL  120
LKPVRLEELR NIWQHVVRRK FSNRERANVD GYEECNRPLN ADFDNVLDQT CVSPDQSGRP  180
SKKRKEYYSE EEDEGEESNS QENDDSSAPK KPRVVWSVEL HRKFVAAVNQ LGIDKAVPKR  240
ILELMNVEKL TRENVASHLQ KYRLYLKRLS AVASHQASIV AALGGSDPFM HMSAFEGLQS  300
YQGFTSSAAL SSFSPQGLLT RNNPTSFGIQ GMAASRPIQI ASVNSTISHS IGDTNKYQLS  360
LPGTSNRPGN LAEGLKATSV GQVQLPQKWI QEETHDLSTI ISGNGLVNGV PGALRSVADS  420
PLLQQDLVER RQANIVIQRS SSANSEHLEG TTGVSSCLMD SHISQQSGLL LSAFSASAVP  480
MNGSFSGTNV AKLGATSSGS TNICPSHDLR VARDNDVGDS SFGSVILLPP DTAQNQKYLN  540
FGGGSSVRHN MDGGNADTLL DAKLAWSSLP TSQPPSNIGS HHPLSQRPNN GSLGVKMIEQ  600
TRASIAAPQT KFDMFISGDI LTPKNASDLS FPRLNSELSS SSCSFDGLLN SIIKMEKDDA  660
SFSDDLGCDF YSLGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25207270164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810721.10.0two-component response regulator ORR23-like isoform X2
SwissprotQ6K8X60.0ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A2S3GU320.0A0A2S3GU32_9POAL; Two-component response regulator
STRINGPavir.J35630.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-114response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]