PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03753.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 195aa    MW: 21579.5 Da    PI: 8.857
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03753.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.9e-174894455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     hn  E+rRR++iN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  Pahal.A03753.1 48 VHNLSEKRRRSKINEKMKALQTLIPNS-----SKTDKASMLDDAIEYLKQLQ 94
                    6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-2041104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-2142104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.9934493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.28E-154798No hitNo description
PfamPF000102.2E-144894IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-195099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MDAQQLDLFL RHQSMANICE SEDALGSSES EPARPARPRG KRSRAAEVHN LSEKRRRSKI  60
NEKMKALQTL IPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGLYLPP ANLSGVPEAL  120
APSEVCATLN QRHELKLASQ ETCMVNSGRF DRGSQRKEVA RDMMPKNTES VLLMPYLHSL  180
QSGDANGGLR AESS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333821e-152BT033382.1 Zea mays full-length cDNA clone ZM_BFb0041N16 mRNA, complete cds.
GenBankBT0640561e-152BT064056.1 Zea mays full-length cDNA clone ZM_BFc0135E23 mRNA, complete cds.
GenBankKJ7269881e-152KJ726988.1 Zea mays clone pUT3689 bHLH transcription factor (bHLH168) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804964.17e-89uncharacterized protein LOC112883903 isoform X2
TrEMBLA0A2T8KY922e-87A0A2T8KY92_9POAL; Uncharacterized protein
STRINGPavir.J11618.1.p8e-86(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-35bHLH family protein