PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A03852.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 395aa MW: 43688.2 Da PI: 6.9257

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A03852.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	76.3	4.1e-24	235	279	1	45
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 k r+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++h Pahal.A03852.1 235 KSRIRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVEGLTIYH 279 68******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-20	233	279	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-9	234	281	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-16	235	278	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-6	239	277	IPR001005	SANT/Myb domain
Pfam	PF14379	6.6E-15	313	355	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MNRLYNGTVP PCLSSAITVV PALSEVSFPR FAEQRSSYGE SKLPIRSDTM STCMLAPNFT 60 SGLHAINKSS NGKLCSGPYV TEPSDSDTQL LSTHSSLLCN SRPLMMDFPE VSEQISSNQE 120 QLLGLFDYPS SVGFPNPQNV TAFGQQVQDT IITDPNTRVG GVALQNEWFS SGSSMQLPKN 180 VGSAESVLKT VDARSATPAT PKSYPYCRTQ RSLPNPFNCD ELCTDNLPSS NSAPKSRIRW 240 TPELHERFVD AVNKLGGSEK ATPKAVQKVM KVEGLTIYHK YRTVQHRPES SDGQSSQTDE 300 VSTLQLKGTG NVEGLMAQIT LQKQLHEQLE IQRKLQLQVE EQSKYLEMII VKQNESLKKL 360 GALPGFQDRF LQVSDNKKER EEWTVCTHSA EHRL*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MNRLYNGTVP PCLSSAITVV PALSEVSFPR FAEQRSSYGE SKLPIRSDTM STCMLAPNFT  60
SGLHAINKSS NGKLCSGPYV TEPSDSDTQL LSTHSSLLCN SRPLMMDFPE VSEQISSNQE  120
QLLGLFDYPS SVGFPNPQNV TAFGQQVQDT IITDPNTRVG GVALQNEWFS SGSSMQLPKN  180
VGSAESVLKT VDARSATPAT PKSYPYCRTQ RSLPNPFNCD ELCTDNLPSS NSAPKSRIRW  240
TPELHERFVD AVNKLGGSEK ATPKAVQKVM KVEGLTIYHK YRTVQHRPES SDGQSSQTDE  300
VSTLQLKGTG NVEGLMAQIT LQKQLHEQLE IQRKLQLQVE EQSKYLEMII VKQNESLKKL  360
GALPGFQDRF LQVSDNKKER EEWTVCTHSA EHRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	235	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025812111.1	0.0	protein PHOSPHATE STARVATION RESPONSE 1-like isoform X3
TrEMBL	A0A3L6QGF2	0.0	A0A3L6QGF2_PANMI; Uncharacterized protein
STRING	Pavir.Aa00126.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5494	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	6e-45	phosphate starvation response 1

Link Out ? help Back to Top
Phytozome	Pahal.A03852.1