PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A03926.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 199aa    MW: 20566.3 Da    PI: 6.7086
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A03926.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.3e-054769123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC+ C + F++   L  H+++H
  Pahal.A03926.1 47 YKCTFCRRGFPTAQALGGHMNVH 69
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-64473No hitNo description
Gene3DG3DSA:3.30.160.603.8E-44571IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.5334774IPR007087Zinc finger, C2H2
SMARTSM003550.00614769IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-64771IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDLSQETKDE ASPSGEAHED DKELQKQRAG SSGGGGDDDD EGTRQPYKCT FCRRGFPTAQ  60
ALGGHMNVHR RHRGRSSAAP TTGAAAAQGI SSGRSGCYEQ QPCYSTMATT VVAFGGQTHP  120
ASVASMAAGG AALLHAERHQ QPYELRLFGR DCAAGGRGKE GGAGDVRRDR CYAKDGDGGD  180
HGGAEKLDLE LRLGGAGS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718338e-52EU971833.1 Zea mays clone 371263 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823363.11e-140zinc finger protein 6-like
TrEMBLA0A2S3GV001e-139A0A2S3GV00_9POAL; Uncharacterized protein
STRINGPavir.J13026.1.p4e-79(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-11C2H2 family protein