PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A03983.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

TCP

Protein Properties

Length: 224aa MW: 22826.7 Da PI: 10.5337

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A03983.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.2	1.7e-39	27	124	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg...... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +ss+s+++ + Pahal.A03983.1 27 AVRKASSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSSSQTTPpaapfi 121 789*************************************************************9999988866666666666655555333333 PP TCP 89 ..k 89 k Pahal.A03983.1 122 lgK 124 331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.2E-34	32	112	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	33	87	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MTTRPAEGGA AAADKQLVPA SNGNALAVRK ASSKDRHSKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTS SPSSLRSSSS SQTTPPAAPF 120 ILGKRVRDDA DAEPTVAAPA PGFWALPARA DFGQLWSFAA APEMMVAAAA AAAATPAMAG 180 EASAARVGNY LPMAQGNLNL LASFSGGPAP TATAGRAEEE SAR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	1e-108	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	1e-108	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	1e-108	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-108	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814152.1	1e-157	transcription factor TCP7-like
Swissprot	Q9FMX2	1e-74	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2S3GV08	1e-156	A0A2S3GV08_9POAL; Uncharacterized protein
STRING	Sb04g038140.1	5e-93	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-44	TCP family protein

Link Out ? help Back to Top
Phytozome	Pahal.A03983.1