PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A04027.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 173aa    MW: 18722.1 Da    PI: 8.9867
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A04027.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.74e-1697152560
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                     ++ +r++kNRe+A rsR+RK+a+++eLe++v  L +eN +Lk + ++lk e+a+l 
  Pahal.A04027.1  97 RKNIRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRQCKQLKVEMAALI 152
                     6889*******************************************999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.3E-1692152No hitNo description
SMARTSM003381.1E-1493157IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.64595151IPR004827Basic-leucine zipper domain
PfamPF001705.8E-1397151IPR004827Basic-leucine zipper domain
CDDcd147071.07E-1597151No hitNo description
SuperFamilySSF579595.31E-1297152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MPRSPQLSLS GCSSLFSLSS TSTSRDNDSA AAAPVPPPPP SLHPLPPRRP LLSLSVGGGA  60
EEEQEEEEEY LLGGLDLHLT GAGGSNSSGC CDGDDERKNI RMMKNRESAL RSRARKRAYV  120
QELEKEVRRL VNENLKLKRQ CKQLKVEMAA LIQPSSSKSN SHIRRAASST QL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812916.11e-120bZIP transcription factor 27-like
RefseqXP_025812921.11e-120bZIP transcription factor 27-like
RefseqXP_025812927.11e-120bZIP transcription factor 27-like
TrEMBLA0A2S3GV621e-119A0A2S3GV62_9POAL; Uncharacterized protein
STRINGPavir.J00689.1.p5e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40173072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35900.17e-14bZIP family protein