PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00059.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 690aa    MW: 73949 Da    PI: 6.6968
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00059.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28202255155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Pahal.B00059.1 202 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 255
                     79*******************.********************************8 PP
2Response_reg77.54.9e-26181261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ + +l+++l + +y +v+++ +++ al++l+e++  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +k G
  Pahal.B00059.1  18 VLVVDDDPTCLVVLKRMLLECRY-DVTTCPQATRALTMLRENRrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKGIKHG 110
                     89*********************.***************99999********************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  Pahal.B00059.1 111 ACDYLIKPVRMEELKN 126
                     *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363929.4E-1821672IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.0E-4215151No hitNo description
SuperFamilySSF521722.99E-3615140IPR011006CheY-like superfamily
SMARTSM004484.7E-3016128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.19617132IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.2E-2318126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.44E-2719131No hitNo description
Gene3DG3DSA:1.10.10.601.1E-29199260IPR009057Homeodomain-like
SuperFamilySSF466899.14E-20199259IPR009057Homeodomain-like
PROSITE profilePS5129411.674199258IPR017930Myb domain
TIGRFAMsTIGR015573.1E-25202255IPR006447Myb domain, plants
PfamPF002497.8E-7204253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAAAAEARGG DFPVGMKVLV VDDDPTCLVV LKRMLLECRY DVTTCPQATR ALTMLRENRR  60
GFDVIISDVH MPDMDGFRLL ELVGLEMDLP VIMMSADSRT DIVMKGIKHG ACDYLIKPVR  120
MEELKNIWQH VVRKKFNENK DHEHSGSLDD TDRNRPNNND NEYASSANDG GDGSWKSQKK  180
KREKEEDEAD LESGDPSSTS KKPRVVWSVE LHQQFVNAVN HLGIDKAVPK KILELMNVPG  240
LTRENVASHL QKFRLYLKRI AQHHAGIPHP FVAPASSAKV APLGGLEFQA LAASGQIPPQ  300
ALAALQDELL GRPTSSLALP GRDQSSLRLA AIKGNKPHGE REIAFGQPIY KCQNNAYGAF  360
PQSSPGLGGL PSFGAWPNNK LGMTDSPSAL GNVSNSQNSN LLLHELQQQP DSLLTGTLQN  420
IDVKPSGIVM PSQSLNAFPA SEGISPNQNP LVIPSQSQSF LASIPPSMKH EPLLASSSPS  480
NSLLGGIDMV NQASTSQPLI STHGANLPGL MNRSSNAMPS SGICNFQSGN NPYVVNQNAM  540
GVSSRPPGVL KTESTDSLNR SYGYIGGSTS VDSGLLSSQS KNPQYGLLQN PNDITGSWSP  600
SQDIDSYGNT LGQGHPGSTS SNYQSSNVAL GKLPDQGRGR NHGFVGKGTC IPSRFAVDEV  660
ESPTNNLSHS IGSSADIVNP DIFGFSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-24198261164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794212.10.0two-component response regulator ORR21
RefseqXP_025794213.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A2S3ISS20.0A0A2S3ISS2_9POAL; Two-component response regulator
TrEMBLA0A2T7CFI50.0A0A2T7CFI5_9POAL; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-114response regulator 2