PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00059.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 637aa    MW: 68254.3 Da    PI: 6.8002
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00059.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28149202155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Pahal.B00059.2 149 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 202
                     79*******************.********************************8 PP
2Response_reg49.62.3e-1767343109
                     H..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  43 d..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     +  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a +  + + + +k Ga d+l Kp+ +eel +
  Pahal.B00059.2   6 RrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADSRTDIVMKGIKHGACDYLIKPVRMEELKN 73 
                     3359******************87754.558***********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.94E-18178No hitNo description
PROSITE profilePS5011031.683179IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363927.0E-1531619IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.3E-27298No hitNo description
SuperFamilySSF521727.68E-23387IPR011006CheY-like superfamily
PfamPF000721.3E-14773IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129411.674146205IPR017930Myb domain
SuperFamilySSF466894.12E-20146206IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-30146207IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-25149202IPR006447Myb domain, plants
PfamPF002497.1E-7151200IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MLRENRRGFD VIISDVHMPD MDGFRLLELV GLEMDLPVIM MSADSRTDIV MKGIKHGACD  60
YLIKPVRMEE LKNIWQHVVR KKFNENKDHE HSGSLDDTDR NRPNNNDNEY ASSANDGGDG  120
SWKSQKKKRE KEEDEADLES GDPSSTSKKP RVVWSVELHQ QFVNAVNHLG IDKAVPKKIL  180
ELMNVPGLTR ENVASHLQKF RLYLKRIAQH HAGIPHPFVA PASSAKVAPL GGLEFQALAA  240
SGQIPPQALA ALQDELLGRP TSSLALPGRD QSSLRLAAIK GNKPHGEREI AFGQPIYKCQ  300
NNAYGAFPQS SPGLGGLPSF GAWPNNKLGM TDSPSALGNV SNSQNSNLLL HELQQQPDSL  360
LTGTLQNIDV KPSGIVMPSQ SLNAFPASEG ISPNQNPLVI PSQSQSFLAS IPPSMKHEPL  420
LASSSPSNSL LGGIDMVNQA STSQPLISTH GANLPGLMNR SSNAMPSSGI CNFQSGNNPY  480
VVNQNAMGVS SRPPGVLKTE STDSLNRSYG YIGGSTSVDS GLLSSQSKNP QYGLLQNPND  540
ITGSWSPSQD IDSYGNTLGQ GHPGSTSSNY QSSNVALGKL PDQGRGRNHG FVGKGTCIPS  600
RFAVDEVESP TNNLSHSIGS SADIVNPDIF GFSGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-24145208164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0601300.0AB060130.1 Zea mays ZmRR8 mRNA for response regulator 8, complete cds.
GenBankEU9755450.0EU975545.1 Zea mays clone 492147 two-component response regulator ARR1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794212.10.0two-component response regulator ORR21
RefseqXP_025794213.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A2S3ISS20.0A0A2S3ISS2_9POAL; Two-component response regulator
TrEMBLA0A2T7CFI50.0A0A2T7CFI5_9POAL; Two-component response regulator
STRINGSb01g042400.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-92response regulator 2